HL_2LDT_002

3D structure

PDB id

2LDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 912-888 alternate conformation for helix 27 of E.coli 16S rRNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2LDT_002 not in the Motif Atlas

Geometric match to HL_5J7L_148

Geometric discrepancy: 0.2637

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

2LDT|2|A|C|13
2LDT|2|A|G|14
2LDT|2|A|C|15
2LDT|2|A|A|16
2LDT|2|A|A|17
2LDT|2|A|G|18

Current chains

Chain A

RNA (31-MER)

Nearby chains