HL_2LJJ_014

3D structure

PDB id

2LJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of subdomain IV-B from the CVB-3 IRES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUACCCCAG

Length

9 nucleotides

Bulged bases

2LJJ|14|A|C|304, 2LJJ|14|A|C|306, 2LJJ|14|A|A|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2LJJ_014 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1686

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

2LJJ|14|A|C|300
2LJJ|14|A|U|301
2LJJ|14|A|A|302
2LJJ|14|A|C|303
2LJJ|14|A|C|304
2LJJ|14|A|C|305
2LJJ|14|A|C|306
2LJJ|14|A|A|307
2LJJ|14|A|G|308

Current chains

Chain A

IV-B RNA

Nearby chains