HL_2MF1_037

3D structure

PDB id

2MF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis of the non-coding RNA RsmZ acting as protein sponge: Conformer R of RsmZ(1-72)/RsmE(dimer) 1to3 complex

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGACGGAUAG

Length

10 nucleotides

Bulged bases

2MF1|10|G|C|7, 2MF1|10|G|U|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2MF1_037 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3414

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

2MF1|10|G|C|4
2MF1|10|G|G|5
2MF1|10|G|A|6
2MF1|10|G|C|7
2MF1|10|G|G|8
2MF1|10|G|G|9
2MF1|10|G|A|10
2MF1|10|G|U|11
2MF1|10|G|A|12
2MF1|10|G|G|13

Current chains

Chain G

RNA_(72-MER)

Nearby chains

Chain C

Carbon storage regulator homolog

Chain D

Carbon storage regulator homolog