HL_2NBX_024

3D structure

PDB id

2NBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the J-K region of EMCV IRES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UAAAAAA

Length

7 nucleotides

Bulged bases

2NBX|8|A|A|771

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2NBX_024 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3462

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

2NBX|8|A|U|769
2NBX|8|A|A|770
2NBX|8|A|A|771
2NBX|8|A|A|772
2NBX|8|A|A|773
2NBX|8|A|A|774
2NBX|8|A|A|775

Current chains

Chain A

IRES RNA (108-MER)

Nearby chains