Motif HL_23696.2 Version HL_23696.2 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8C3A_196 | 8C3A | 0.5288 | 2 | CM | SSU rRNA | C | 228 | U | 229 | G | 232 | G | 233 | cWW | tSWa | |
| 2 | HL_7D81_001 | 7D81 | 0.4472 | 2 | A | nadA RNA | C | 26 | G | 27 | A | 30 | G | 31 | cWW | ||
| 3 | HL_6CZR_082 | 6CZR | 0.3683 | 2 | 1a | SSU rRNA | C | 415 | U | 416 | G | 419 | G | 420 | cWW | tSW | |
| 4 | HL_5HR6_002 | 5HR6 | 0.0762 | 5 | C | tRNA | C | 31 | C | 32 | C | 36 | G | 39 | cWW | ntSW | |
| 5 | HL_5HR7_005 | 5HR7 | 0.0000 | 5 | D | tRNA | C | 31 | C | 32 | C | 36 | G | 39 | cWW | ntSW | |
| 6 | HL_2CZJ_007 | 2CZJ | 0.3353 | 2 | UNCG variation | H | tmRNA (63-MER) | G | 25 | U | 26 | G | 29 | C | 30 | cWW | |
| 7 | HL_8HNT_002 | 8HNT | 0.5679 | 2 | B | sgRNA | U | 103 | G | 104 | A | 107 | G | 108 | cWW | ||
| 8 | HL_3SIU_002 | 3SIU | 0.7765 | 3 | F | U4atac snRNA | C | 40 | G | 41 | U | 44 | G | 46 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUCGG | 2 |
| CCUUUCACG | 2 |
| CGAAAG | 1 |
| GUUCGC | 1 |
| UGUAAG | 1 |
| CGCAUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCG | 3 |
| CUUUCAC | 2 |
| GAAA | 1 |
| GUAA | 1 |
| GCAUA | 1 |
- Annotations
-
- (7)
- UNCG variation (1)
- Basepair signature
- cWW-F-F
- Heat map statistics
- Min 0.08 | Avg 0.50 | Max 0.93
Coloring options: