HL_2NRE_006

3D structure

PDB id

2NRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUUCAAGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2NRE_006 not in the Motif Atlas

Geometric match to HL_2ZZN_006

Geometric discrepancy: 0.1554

The information below is about HL_2ZZN_006

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

2NRE|1|F|G|53||||5_555
2NRE|1|F|U|54||||5_555
2NRE|1|F|U|55||||5_555
2NRE|1|F|C|56||||5_555
2NRE|1|F|A|57||||5_555
2NRE|1|F|A|58||||5_555
2NRE|1|F|G|59||||5_555
2NRE|1|F|U|60||||5_555
2NRE|1|F|C|61||||5_555

Current chains

Chain F

leucyl tRNA

Nearby chains

Chain A

tRNA pseudouridine synthase A