HL_2NZ4_006

3D structure

PDB id

2NZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural investigation of the GlmS ribozyme bound to its catalytic cofactor

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

AGGUGGGGUUUAU

Length

13 nucleotides

Bulged bases

2NZ4|1|Q|U|34, 2NZ4|1|Q|U|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_29958.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

2NZ4|1|Q|A|31
2NZ4|1|Q|G|32
2NZ4|1|Q|G|33
2NZ4|1|Q|U|34
2NZ4|1|Q|G|35
2NZ4|1|Q|G|36
2NZ4|1|Q|G|37
2NZ4|1|Q|G|38
2NZ4|1|Q|U|39
2NZ4|1|Q|U|40
2NZ4|1|Q|U|41
2NZ4|1|Q|A|42
2NZ4|1|Q|U|43

Current chains

Chain Q

GlmS ribozyme

Nearby chains

Chain F

substrate strand RNA 13-mer

Chain G

substrate strand RNA 13-mer

Chain P

GlmS ribozyme

Chain R

GlmS ribozyme