2NZ4 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2NZ4_017 | 1/P/17:17 | No text annotation | ||
| HL_2NZ4_002 | 1/P/31:43 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_2NZ4_003 | 1/P/71:79 | Pseudoknot geometry | geometric HL_3HHN_009 HL_30680.3 | |
| HL_2NZ4_004 | 1/P/108:113 | GNRA | geometric HL_4V9F_015 HL_37824.7 | |
| HL_2NZ4_005 | 1/Q/17A:17L | No text annotation HL_33074.4 | ||
| HL_2NZ4_006 | 1/Q/31:43 | No text annotation HL_29958.1 | ||
| HL_2NZ4_007 | 1/Q/71:79 | Pseudoknot geometry HL_93324.4 | ||
| HL_2NZ4_008 | 1/Q/108:113 | GNRA HL_37824.7 | ||
| HL_2NZ4_009 | 1/R/17A:17L | U1 small nuclear ribonucleoprotein A binding hairpin | geometric HL_6LAX_001 HL_33074.4 | |
| HL_2NZ4_010 | 1/R/31:43 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_2NZ4_011 | 1/R/71:79 | Pseudoknot geometry | geometric HL_3HHN_009 HL_30680.3 | |
| HL_2NZ4_012 | 1/R/108:113 | GNRA | geometric HL_3G9C_008 NA | |
| HL_2NZ4_018 | 1/S/17:17 | No text annotation | ||
| HL_2NZ4_014 | 1/S/31:43 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_2NZ4_015 | 1/S/71:79 | Pseudoknot geometry | geometric HL_3HHN_009 HL_30680.3 | |
| HL_2NZ4_016 | 1/S/108:113 | GNRA | geometric HL_5TBW_010 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_2NZ4_001 | No text annotation | ||
| HL_2NZ4_013 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2NZ4_014 | 1/E/5:7, 1/P/52:53 | No text annotation | ||
| IL_2NZ4_004 | 1/F/5:7, 1/Q/52:53 | Single bulged A IL_31462.6 | ||
| IL_2NZ4_007 | 1/G/5:7, 1/R/52:53 | Single bulged A | geometric IL_3G9C_005 NA | |
| IL_2NZ4_015 | 1/H/5:7, 1/S/52:53 | No text annotation | ||
| IL_2NZ4_003 | 1/P/96:102, 1/P/119:126 | No text annotation | geometric IL_3G9C_007 NA | |
| IL_2NZ4_006 | 1/Q/96:102, 1/Q/119:126 | No text annotation IL_58350.1 | ||
| IL_2NZ4_009 | 1/R/96:102, 1/R/119:126 | No text annotation | geometric IL_3G9C_007 NA | |
| IL_2NZ4_013 | 1/S/96:102, 1/S/119:126 | No text annotation | geometric IL_3G9C_007 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2NZ4_002 | No text annotation | ||
| IL_2NZ4_011 | Isolated non-canonical cWW pair | ||
| IL_2NZ4_012 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_2NZ4_001 | 1/E/7:8, 1/P/26:29, 1/P/45:52 | No text annotation | geometric J3_3G9C_002 NA | |
| J3_2NZ4_002 | 1/F/7:8, 1/Q/26:29, 1/Q/45:52 | No text annotation | ||
| J3_2NZ4_003 | 1/G/7:8, 1/R/26:29, 1/R/45:52 | No text annotation | geometric J3_3G9C_002 NA | |
| J3_2NZ4_004 | 1/H/7:8, 1/S/26:29, 1/S/45:52 | No text annotation |
Problematic loops
No problematic loops
Coloring options: