HL_2O44_011

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGAGAGUC

Length

9 nucleotides

Bulged bases

2O44|1|A|G|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O44_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.254

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

2O44|1|A|G|338
2O44|1|A|U|339
2O44|1|A|G|340
2O44|1|A|A|341
2O44|1|A|G|342
2O44|1|A|A|343
2O44|1|A|G|344
2O44|1|A|U|345
2O44|1|A|C|346

Current chains

Chain A

23S rRNA

Nearby chains