HL_2O44_012

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGUUCGUGAAACG

Length

13 nucleotides

Bulged bases

2O44|1|A|U|397, 2O44|1|A|G|399, 2O44|1|A|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O44_012 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.4481

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

2O44|1|A|U|394
2O44|1|A|G|395
2O44|1|A|U|396
2O44|1|A|U|397
2O44|1|A|C|398
2O44|1|A|G|399
2O44|1|A|U|400
2O44|1|A|G|401
2O44|1|A|A|402
2O44|1|A|A|403
2O44|1|A|A|404
2O44|1|A|C|405
2O44|1|A|G|406

Current chains

Chain A

23S rRNA

Nearby chains