HL_2O44_034

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAGGUCAAGAUUCCUG

Length

16 nucleotides

Bulged bases

2O44|1|A|U|1409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O44_034 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3472

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

2O44|1|A|C|1399
2O44|1|A|A|1400
2O44|1|A|G|1401
2O44|1|A|G|1402
2O44|1|A|U|1403
2O44|1|A|C|1404
2O44|1|A|A|1405
2O44|1|A|A|1406
2O44|1|A|G|1407
2O44|1|A|A|1408
2O44|1|A|U|1409
2O44|1|A|U|1410
2O44|1|A|C|1411
2O44|1|A|C|1412
2O44|1|A|U|1413
2O44|1|A|G|1414

Current chains

Chain A

23S rRNA

Nearby chains