HL_2O44_039

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCAAUG

Length

6 nucleotides

Bulged bases

2O44|1|A|U|1651

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O44_039 not in the Motif Atlas

Homologous match to HL_7RQB_041

Geometric discrepancy: 0.2846

The information below is about HL_7RQB_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01057.2

Basepair signature

cWW

Number of instances in this motif group

5

Unit IDs

2O44|1|A|U|1647
2O44|1|A|C|1648
2O44|1|A|A|1649
2O44|1|A|A|1650
2O44|1|A|U|1651
2O44|1|A|G|1652

Current chains

Chain A

23S rRNA

Nearby chains