HL_2O44_043

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUUACCAAAAUC

Length

13 nucleotides

Bulged bases

2O44|1|A|A|1771, 2O44|1|A|C|1772, 2O44|1|A|C|1773, 2O44|1|A|A|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O44_043 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.2207

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

2O44|1|A|G|1767
2O44|1|A|U|1768
2O44|1|A|U|1769
2O44|1|A|U|1770
2O44|1|A|A|1771
2O44|1|A|C|1772
2O44|1|A|C|1773
2O44|1|A|A|1774
2O44|1|A|A|1775
2O44|1|A|A|1776
2O44|1|A|A|1777
2O44|1|A|U|1778
2O44|1|A|C|1779

Current chains

Chain A

23S rRNA

Nearby chains