HL_2O45_016

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCUUAUGCG

Length

9 nucleotides

Bulged bases

2O45|1|A|U|554, 2O45|1|A|U|555, 2O45|1|A|G|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O45_016 not in the Motif Atlas

Homologous match to HL_7RQB_017

Geometric discrepancy: 0.5316

The information below is about HL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O45|1|A|C|552
2O45|1|A|C|553
2O45|1|A|U|554
2O45|1|A|U|555
2O45|1|A|A|556
2O45|1|A|U|557
2O45|1|A|G|558
2O45|1|A|C|559
2O45|1|A|G|560

Current chains

Chain A

23S rRNA

Nearby chains