HL_7RQB_017

3D structure

PDB id

7RQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CGAG

Length

4 nucleotides

Bulged bases

7RQB|1|1A|A|548

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RQB_017 not in the Motif Atlas

Homologous match to HL_8VTW_016

Geometric discrepancy: 0.0689

The information below is about HL_8VTW_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76539.6

Basepair signature

cWW-F

Number of instances in this motif group

20

Unit IDs

7RQB|1|1A|C|543
7RQB|1|1A|G|545
7RQB|1|1A|A|548
7RQB|1|1A|G|549

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1N

50S ribosomal protein L13

Chain 1V

50S ribosomal protein L21