HL_2O45_027

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

2O45|1|A|A|1081, 2O45|1|A|A|1084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O45_027 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.2951

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

2O45|1|A|C|1075
2O45|1|A|U|1076
2O45|1|A|U|1077
2O45|1|A|A|1078
2O45|1|A|G|1079
2O45|1|A|A|1080
2O45|1|A|A|1081
2O45|1|A|G|1082
2O45|1|A|C|1083
2O45|1|A|A|1084
2O45|1|A|G|1085

Current chains

Chain A

23S rRNA

Nearby chains