HL_2O45_031

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O45_031 not in the Motif Atlas

Geometric match to HL_7RQB_033

Geometric discrepancy: 0.1929

The information below is about HL_7RQB_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

2O45|1|A|G|1294
2O45|1|A|U|1295
2O45|1|A|G|1296
2O45|1|A|A|1297
2O45|1|A|G|1298
2O45|1|A|A|1299
2O45|1|A|A|1300
2O45|1|A|U|1301
2O45|1|A|C|1302

Current chains

Chain A

23S rRNA

Nearby chains