HL_2O45_032

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

2O45|1|A|G|1338, 2O45|1|A|U|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O45_032 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.172

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

2O45|1|A|G|1337
2O45|1|A|G|1338
2O45|1|A|U|1339
2O45|1|A|C|1340
2O45|1|A|G|1341
2O45|1|A|U|1342
2O45|1|A|C|1343

Current chains

Chain A

23S rRNA

Nearby chains