HL_2O45_044

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUUUACCAAAAUC

Length

13 nucleotides

Bulged bases

2O45|1|A|A|1771, 2O45|1|A|C|1772, 2O45|1|A|C|1773, 2O45|1|A|A|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O45_044 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.3371

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

2O45|1|A|G|1767
2O45|1|A|U|1768
2O45|1|A|U|1769
2O45|1|A|U|1770
2O45|1|A|A|1771
2O45|1|A|C|1772
2O45|1|A|C|1773
2O45|1|A|A|1774
2O45|1|A|A|1775
2O45|1|A|A|1776
2O45|1|A|A|1777
2O45|1|A|U|1778
2O45|1|A|C|1779

Current chains

Chain A

23S rRNA

Nearby chains