HL_2O45_045

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

2O45|1|A|A|1799, 2O45|1|A|C|1801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O45_045 not in the Motif Atlas

Homologous match to HL_5J7L_179

Geometric discrepancy: 0.3305

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

2O45|1|A|C|1797
2O45|1|A|G|1798
2O45|1|A|A|1799
2O45|1|A|A|1800
2O45|1|A|C|1801
2O45|1|A|A|1802
2O45|1|A|G|1803

Current chains

Chain A

23S rRNA

Nearby chains