HL_2O45_048

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

2O45|1|A|U|1938

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O45_048 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1913

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

2O45|1|A|G|1932
2O45|1|A|G|1933
2O45|1|A|U|1934
2O45|1|A|A|1935
2O45|1|A|A|1936
2O45|1|A|G|1937
2O45|1|A|U|1938
2O45|1|A|U|1939
2O45|1|A|C|1940

Current chains

Chain A

23S rRNA

Nearby chains