Motif HL_20167.2 Version HL_20167.2 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_039 | 4WF9 | 0.6934 | 1 | GNRA with extra cWW | X | LSU rRNA | A | 1673 | U | 1674 | G | 1675 | A | 1676 | G | 1677 | A | 1679 | U | 1680 | U | 1681 | cWW | cwW | ntSH |
| 2 | HL_3CUL_003 | 3CUL | 0.5907 | 1 | T-loop related | C | RNA (92-MER) | G | 69 | U | 70 | U | 71 | C | 72 | G | 73 | A | 74 | U | 76 | C | 77 | cWW | cwW | |
| 3 | HL_1U9S_003 | 1U9S | 0.5374 | 1 | A | RIBONUCLEASE P | G | 181 | G | 182 | U | 183 | A | 184 | A | 185 | G | 186 | A | 187 | C | 189 | cWW | |||
| 4 | HL_8P9A_161 | 8P9A | 0.2268 | 1 | AR | LSU rRNA | U | 2292 | C | 2293 | U | 2294 | A | 2295 | A | 2296 | U | 2297 | A | 2299 | G | 2300 | cWW | |||
| 5 | HL_8CRE_048 | 8CRE | 0.1922 | 1 | 1 | LSU rRNA | U | 2270 | C | 2271 | U | 2272 | A | 2273 | A | 2274 | U | 2275 | A | 2277 | G | 2278 | cWW | |||
| 6 | HL_7A0S_048 | 7A0S | 0.0000 | 1 | X | LSU rRNA | G | 1932 | G | 1933 | U | 1934 | A | 1935 | A | 1936 | G | 1937 | U | 1939 | C | 1940 | cWW | ncWB | ||
| 7 | HL_9DFE_047 | 9DFE | 0.1053 | 1 | 1A | LSU rRNA | G | 1949 | G | 1950 | U | 1951 | A | 1952 | A | 1953 | G | 1954 | U | 1956 | C | 1957 | cWW | ncWB | ||
| 8 | HL_5J7L_182 | 5J7L | 0.1222 | 1 | DA | LSU rRNA | G | 1949 | G | 1950 | U | 1951 | A | 1952 | A | 1953 | G | 1954 | U | 1956 | C | 1957 | cWW | ncWB | ||
| 9 | HL_4WF9_046 | 4WF9 | 0.1209 | 1 | X | LSU rRNA | G | 1976 | G | 1977 | U | 1978 | A | 1979 | A | 1980 | G | 1981 | U | 1983 | C | 1984 | cWW | ncWB | ||
| 10 | HL_4V9F_051 | 4V9F | 0.1678 | 1 | 0 | LSU rRNA | C | 1990 | A | 1991 | U | 1992 | C | 1993 | A | 1994 | G | 1995 | A | 1997 | G | 1998 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAAGUUC | 4 |
| UCUAAUUAG | 2 |
| AUGAGAAUU | 1 |
| GUUCGAAUC | 1 |
| GGUAAGAGC | 1 |
| CAUCAGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAAGUU | 4 |
| CUAAUUA | 2 |
| UGAGAAU | 1 |
| UUCGAAU | 1 |
| GUAAGAG | 1 |
| AUCAGUA | 1 |
- Annotations
-
- (8)
- T-loop related (1)
- GNRA with extra cWW (1)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.35 | Max 0.76
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