HL_2O45_053

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

2O45|1|A|A|2247, 2O45|1|A|C|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O45_053 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.2881

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

2O45|1|A|C|2243
2O45|1|A|C|2244
2O45|1|A|A|2245
2O45|1|A|A|2246
2O45|1|A|A|2247
2O45|1|A|A|2248
2O45|1|A|U|2249
2O45|1|A|G|2250
2O45|1|A|U|2251
2O45|1|A|A|2252
2O45|1|A|A|2253
2O45|1|A|C|2254
2O45|1|A|G|2255

Current chains

Chain A

23S rRNA

Nearby chains