HL_2O45_075

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGGUUGGAAAUCG

Length

13 nucleotides

Bulged bases

2O45|1|A|U|2285, 2O45|1|A|G|2286, 2O45|1|A|G|2287, 2O45|1|A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2O45_075 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3835

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

2O45|1|A|C|2281
2O45|1|A|G|2282
2O45|1|A|G|2283
2O45|1|A|U|2284
2O45|1|A|U|2285
2O45|1|A|G|2286
2O45|1|A|G|2287
2O45|1|A|A|2288
2O45|1|A|A|2289
2O45|1|A|A|2290
2O45|1|A|U|2291
2O45|1|A|C|2292
2O45|1|A|G|2293

Current chains

Chain A

23S rRNA

Nearby chains