HL_2OGO_012

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GUUCGUGAAAC

Length

11 nucleotides

Bulged bases

2OGO|1|0|G|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_012 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.2387

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

2OGO|1|0|G|395
2OGO|1|0|U|396
2OGO|1|0|U|397
2OGO|1|0|C|398
2OGO|1|0|G|399
2OGO|1|0|U|400
2OGO|1|0|G|401
2OGO|1|0|A|402
2OGO|1|0|A|403
2OGO|1|0|A|404
2OGO|1|0|C|405

Current chains

Chain 0

23S ribosomal RNA

Nearby chains