2OGO Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2OGO_074 | 1/0/58:67 | Pseudoknot with intercalation | homologous HL_4WF9_067 HL_17803.2 | |
| HL_2OGO_002 | 1/0/85:95 | No text annotation | homologous HL_7A0S_002 HL_76590.1 | |
| HL_2OGO_003 | 1/0/121:126 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_2OGO_004 | 1/0/133:138 | No text annotation | geometric HL_5U3G_001 HL_75660.9 | |
| HL_2OGO_005 | 1/0/146:151 | No text annotation | geometric HL_5U3G_001 HL_75660.9 | |
| HL_2OGO_006 | 1/0/171:178 | No text annotation | homologous HL_5J7L_139 NA | |
| HL_2OGO_075 | 1/0/202:207 | No text annotation | homologous HL_7A0S_007 HL_91813.1 | |
| HL_2OGO_008 | 1/0/223:229 | No text annotation | homologous HL_4WF9_008 HL_76371.3 | |
| HL_2OGO_009 | 1/0/316:323 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_2OGO_010 | 1/0/330:334 | No text annotation | homologous HL_7A0S_011 HL_75660.9 | |
| HL_2OGO_011 | 1/0/338:346 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_2OGO_012 | 1/0/395:405 | No text annotation | homologous HL_7A0S_013 HL_91503.8 | |
| HL_2OGO_013 | 1/0/423:430 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_2OGO_014 | 1/0/473:478 | GNRA | homologous HL_4WF9_015 HL_34789.5 | |
| HL_2OGO_015 | 1/0/498:503 | GNRA | homologous HL_7A0S_016 HL_34789.5 | |
| HL_2OGO_016 | 1/0/552:560 | No text annotation | ||
| HL_2OGO_017 | 1/0/575:584 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_018 HL_33597.4 | |
| HL_2OGO_018 | 1/0/615:633 | No text annotation | ||
| HL_2OGO_019 | 1/0/640:645 | GNRA | homologous HL_7A0S_020 HL_34789.5 | |
| HL_2OGO_020 | 1/0/651:658 | No text annotation | homologous HL_7A0S_021 HL_81314.1 | |
| HL_2OGO_021 | 1/0/725:732 | No text annotation | ||
| HL_2OGO_076 | 1/0/758:765 | No text annotation | ||
| HL_2OGO_023 | 1/0/792:798 | UNCG variation | homologous HL_7A0S_023 HL_91813.1 | |
| HL_2OGO_070 | 1/0/839:844 | No text annotation | homologous HL_7A0S_024 HL_27530.2 | |
| HL_2OGO_026 | 1/0/966:973 | GNRA | homologous HL_7A0S_026 HL_34789.5 | |
| HL_2OGO_027 | 1/0/989:996 | No text annotation | homologous HL_7A0S_027 HL_47171.2 | |
| HL_2OGO_028 | 1/0/1075:1085 | No text annotation | homologous HL_6PRV_001 HL_20174.1 | |
| HL_2OGO_031 | 1/0/1235:1240 | GNRA | homologous HL_7A0S_031 HL_34789.5 | |
| HL_2OGO_032 | 1/0/1294:1302 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_2OGO_033 | 1/0/1337:1343 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_49081.1 | |
| HL_2OGO_034 | 1/0/1376:1381 | GNRA variation | homologous HL_7A0S_034 HL_34789.5 | |
| HL_2OGO_035 | 1/0/1402:1411 | No text annotation | geometric HL_2ZNI_001 HL_75660.9 | |
| HL_2OGO_071 | 1/0/1463:1478 | No text annotation | ||
| HL_2OGO_036 | 1/0/1465:1477 | No text annotation | ||
| HL_2OGO_037 | 1/0/1508:1514 | No text annotation | homologous HL_7A0S_037 HL_39243.1 | |
| HL_2OGO_038 | 1/0/1549:1554 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_2OGO_039 | 1/0/1581:1584 | Mini UNCG | homologous HL_4WF9_037 HL_90436.4 | |
| HL_2OGO_040 | 1/0/1628:1635 | No text annotation | homologous HL_7A0S_040 HL_28592.3 | |
| HL_2OGO_072 | 1/0/1647:1652 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_073 HL_49081.1 | |
| HL_2OGO_042 | 1/0/1708:1713 | UNCG variation | geometric HL_1P6V_001 NA | |
| HL_2OGO_043 | 1/0/1731:1735 | No text annotation | homologous HL_7A0S_043 NA | |
| HL_2OGO_044 | 1/0/1743:1747 | No text annotation | homologous HL_7A0S_044 HL_80709.5 | |
| HL_2OGO_045 | 1/0/1767:1779 | No text annotation | homologous HL_7A0S_045 HL_50951.2 | |
| HL_2OGO_046 | 1/0/1797:1803 | No text annotation | homologous HL_4WF9_044 NA | |
| HL_2OGO_047 | 1/0/1855:1862 | GNRA with extra cWW | geometric HL_4WF9_053 HL_87268.3 | |
| HL_2OGO_073 | 1/0/1933:1939 | No text annotation | ||
| HL_2OGO_050 | 1/0/2010:2019 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_2OGO_077 | 1/0/2189:2196 | No text annotation | ||
| HL_2OGO_052 | 1/0/2227:2235 | LSU P loop | homologous HL_7A0S_052 HL_11974.3 | |
| HL_2OGO_053 | 1/0/2243:2255 | No text annotation | homologous HL_7A0S_053 HL_02042.2 | |
| HL_2OGO_054 | 1/0/2282:2292 | No text annotation | ||
| HL_2OGO_055 | 1/0/2303:2310 | Pseudoknot geometry | geometric HL_7A0S_055 HL_52651.3 | |
| HL_2OGO_056 | 1/0/2334:2341 | GNRA with extra cWW | homologous HL_7A0S_056 HL_87268.3 | |
| HL_2OGO_057 | 1/0/2353:2358 | GNRA | homologous HL_4WF9_054 HL_34789.5 | |
| HL_2OGO_058 | 1/0/2383:2392 | No text annotation | homologous HL_7A0S_058 HL_51853.2 | |
| HL_2OGO_059 | 1/0/2450:2458 | No text annotation | homologous HL_4WF9_056 HL_52011.2 | |
| HL_2OGO_060 | 1/0/2507:2514 | GNRA variation | homologous HL_7A0S_060 HL_46665.3 | |
| HL_2OGO_061 | 1/0/2530:2536 | No text annotation | homologous HL_5J7L_195 NA | |
| HL_2OGO_062 | 1/0/2573:2578 | GNRA | homologous HL_7RQB_063 NA | |
| HL_2OGO_063 | 1/0/2637:2642 | GNRA | geometric HL_1MZP_001 HL_34789.5 | |
| HL_2OGO_078 | 1/0/2680:2685 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_12125.3 | |
| HL_2OGO_065 | 1/0/2725:2739 | No text annotation | homologous HL_4WF9_062 HL_53269.3 | |
| HL_2OGO_067 | 1/0/2794:2802 | No text annotation | homologous HL_7A0S_067 HL_37889.2 | |
| HL_2OGO_068 | 1/0/2831:2836 | GNRA | homologous HL_7A0S_068 HL_34789.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_2OGO_001 | No text annotation | ||
| HL_2OGO_007 | No text annotation | ||
| HL_2OGO_069 | No text annotation | ||
| HL_2OGO_022 | No text annotation | ||
| HL_2OGO_024 | No text annotation | ||
| HL_2OGO_025 | No text annotation | ||
| HL_2OGO_029 | No text annotation | ||
| HL_2OGO_030 | No text annotation | ||
| HL_2OGO_041 | No text annotation | ||
| HL_2OGO_048 | No text annotation | ||
| HL_2OGO_049 | No text annotation | ||
| HL_2OGO_051 | No text annotation | ||
| HL_2OGO_064 | No text annotation | ||
| HL_2OGO_066 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2OGO_001 | 1/0/24:30, 1/0/520:526 | Triple sheared with non-canonical cWW | homologous IL_7A0S_001 IL_22311.2 | |
| IL_2OGO_002 | 1/0/36:37, 1/0/454:456 | Single bulged A | homologous IL_4WF9_002 IL_14190.3 | |
| IL_2OGO_003 | 1/0/42:43, 1/0/447:449 | Minor groove platform | homologous IL_7A0S_003 IL_34520.4 | |
| IL_2OGO_004 | 1/0/80:84, 1/0/96:103 | Kink-turn | homologous IL_7A0S_004 IL_94910.1 | |
| IL_2OGO_005 | 1/0/160:161, 1/0/189:191 | Single stack bend | homologous IL_4WF9_007 IL_15011.4 | |
| IL_2OGO_006 | 1/0/165:171, 1/0/178:185 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_006 IL_62167.4 | |
| IL_2OGO_007 | 1/0/215:222, 1/0/230:236 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_007 IL_62167.4 | |
| IL_2OGO_008 | 1/0/299:303, 1/0/359:363 | No text annotation | ||
| IL_2OGO_009 | 1/0/303:306, 1/0/354:359 | No text annotation | homologous IL_7A0S_008 IL_05192.8 | |
| IL_2OGO_011 | 1/0/492:495, 1/0/506:519 | No text annotation | homologous IL_7A0S_009 IL_44923.2 | |
| IL_2OGO_013 | 1/0/573:575, 1/0/584:586 | Isolated non-canonical cWW pair | geometric IL_7A0S_011 IL_71625.4 | |
| IL_2OGO_014 | 1/0/600:602, 1/0/678:679 | Single bulged A | homologous IL_7A0S_012 IL_14190.3 | |
| IL_2OGO_015 | 1/0/685:687, 1/0/819:821 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 NA | |
| IL_2OGO_016 | 1/0/687:691, 1/0/812:819 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_73855.2 | |
| IL_2OGO_017 | 1/0/715:716, 1/0/741:743 | Single bulged G | geometric IL_7A0S_017 IL_28408.3 | |
| IL_2OGO_018 | 1/0/716:721, 1/0/736:741 | Triple sheared with non-canonical cWW | homologous IL_7A0S_018 IL_29495.2 | |
| IL_2OGO_019 | 1/0/750:754, 1/0/769:772 | No text annotation | ||
| IL_2OGO_020 | 1/0/754:756, 1/0/767:769 | Isolated non-canonical cWW pair | homologous IL_7A0S_020 IL_01003.5 | |
| IL_2OGO_021 | 1/0/850:851, 1/0/951:953 | Single stack bend | geometric IL_7A0S_022 IL_15011.4 | |
| IL_2OGO_023 | 1/0/857:860, 1/0/944:945 | Major groove intercalation | geometric IL_4YAZ_007 IL_71421.4 | |
| IL_2OGO_024 | 1/0/860:861, 1/0/942:944 | No text annotation | ||
| IL_2OGO_026 | 1/0/863:864, 1/0/938:940 | Single stack bend | homologous IL_5J7L_269 NA | |
| IL_2OGO_027 | 1/0/864:866, 1/0/936:938 | Isolated non-canonical cWW pair | geometric IL_7A0S_026 IL_01003.5 | |
| IL_2OGO_029 | 1/0/870:875, 1/0/927:932 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_2OGO_030 | 1/0/875:876, 1/0/925:927 | Single bulged G | homologous IL_5J7L_271 NA | |
| IL_2OGO_031 | 1/0/877:881, 1/0/921:924 | C-loop | homologous IL_7RQB_029 NA | |
| IL_2OGO_129 | 1/0/883:885, 1/0/917:919 | Isolated non-canonical cWW pair | homologous IL_7A0S_030 IL_42997.6 | |
| IL_2OGO_033 | 1/0/963:965, 1/0/974:976 | Isolated non-canonical cWW pair | homologous IL_7A0S_031 IL_01003.5 | |
| IL_2OGO_034 | 1/0/1005:1007, 1/0/1170:1171 | Single bulged C | homologous IL_7A0S_032 IL_05642.4 | |
| IL_2OGO_035 | 1/0/1009:1013, 1/0/1164:1168 | UAA/GAN | homologous IL_7A0S_033 IL_08938.2 | |
| IL_2OGO_036 | 1/0/1015:1022, 1/0/1161:1162 | Multiple bulged bases | geometric IL_1R3E_001 IL_05670.1 | |
| IL_2OGO_037 | 1/0/1022:1024, 1/0/1160:1161 | Single bulged U | homologous IL_7A0S_035 IL_97561.6 | |
| IL_2OGO_039 | 1/0/1029:1035, 1/0/1150:1155 | Kink-turn related | geometric IL_7A0S_036 IL_57188.6 | |
| IL_2OGO_113 | 1/0/1035:1041, 1/0/1135:1150 | No text annotation | geometric IL_7A0S_037 IL_50715.4 | |
| IL_2OGO_040 | 1/0/1042:1045, 1/0/1132:1134 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_2OGO_043 | 1/0/1054:1063, 1/0/1118:1123 | No text annotation | ||
| IL_2OGO_044 | 1/0/1070:1073, 1/0/1087:1090 | No text annotation | ||
| IL_2OGO_130 | 1/0/1210:1212, 1/0/1260:1263 | Isolated cWS basepair | homologous IL_5J7L_286 NA | |
| IL_2OGO_047 | 1/0/1218:1220, 1/0/1252:1254 | Isolated non-canonical cWW pair | homologous IL_7A0S_042 IL_01003.5 | |
| IL_2OGO_048 | 1/0/1221:1228, 1/0/1247:1251 | Kink-turn | homologous IL_7A0S_043 IL_90775.2 | |
| IL_2OGO_049 | 1/0/1232:1234, 1/0/1241:1243 | Intercalated cWW | homologous IL_7A0S_044 IL_53541.1 | |
| IL_2OGO_050 | 1/0/1275:1282, 1/0/1994:2000 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_045 IL_62167.4 | |
| IL_2OGO_117 | 1/0/1332:1336, 1/0/1344:1346 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_06671.2 | |
| IL_2OGO_052 | 1/0/1364:1368, 1/0/1389:1393 | UAA/GAN | homologous IL_7A0S_048 IL_89021.4 | |
| IL_2OGO_131 | 1/0/1370:1374, 1/0/1383:1387 | tSH-tWH-tHS | homologous IL_7A0S_049 IL_05821.2 | |
| IL_2OGO_054 | 1/0/1426:1430, 1/0/1598:1605 | Kink-turn | homologous IL_7A0S_050 IL_28245.1 | |
| IL_2OGO_055 | 1/0/1431:1437, 1/0/1591:1597 | No text annotation | geometric IL_5TBW_088 NA | |
| IL_2OGO_056 | 1/0/1447:1449, 1/0/1573:1576 | Isolated non-canonical cWW pair | homologous IL_7A0S_052 IL_38565.3 | |
| IL_2OGO_057 | 1/0/1451:1454, 1/0/1567:1571 | tSH-tHW | homologous IL_7A0S_053 IL_74317.1 | |
| IL_2OGO_058 | 1/0/1463:1465, 1/0/1477:1478 | Single stack bend | geometric IL_7A0S_054 IL_15011.4 | |
| IL_2OGO_059 | 1/0/1495:1498, 1/0/1522:1528 | No text annotation | ||
| IL_2OGO_061 | 1/0/1503:1508, 1/0/1514:1517 | No text annotation | ||
| IL_2OGO_062 | 1/0/1668:1673, 1/0/1987:1989 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_2OGO_063 | 1/0/1680:1682, 1/0/1978:1980 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.2 | |
| IL_2OGO_064 | 1/0/1683:1686, 1/0/1976:1977 | Major groove platform; stack outside cWW | homologous IL_5J7L_306 NA | |
| IL_2OGO_120 | 1/0/1683:1691, 1/0/1973:1977 | No text annotation | homologous IL_7A0S_109 IL_80252.2 | |
| IL_2OGO_065 | 1/0/1686:1691, 1/0/1973:1976 | Intercalated tWH | geometric IL_7A0S_062 IL_28217.2 | |
| IL_2OGO_066 | 1/0/1703:1708, 1/0/1713:1719 | tSH-tSH-tHH-tHS | homologous IL_7A0S_063 IL_20700.2 | |
| IL_2OGO_067 | 1/0/1761:1762, 1/0/1963:1965 | Single bulged A | homologous IL_4WF9_068 IL_14190.3 | |
| IL_2OGO_069 | 1/0/1789:1795, 1/0/1805:1813 | Kink-turn related | homologous IL_4WF9_069 IL_17069.6 | |
| IL_2OGO_070 | 1/0/1829:1832, 1/0/1885:1886 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_55206.2 | |
| IL_2OGO_122 | 1/0/1833:1834, 1/0/1881:1884 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_2OGO_072 | 1/0/1838:1841, 1/0/1876:1877 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_072 IL_73108.3 | |
| IL_2OGO_073 | 1/0/1843:1848, 1/0/1869:1874 | No text annotation | geometric IL_9E6Q_072 IL_74322.2 | |
| IL_2OGO_074 | 1/0/1848:1852, 1/0/1865:1869 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_2OGO_077 | 1/0/1916:1917, 1/0/1947:1950 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_2OGO_078 | 1/0/1917:1928, 1/0/1944:1947 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_2OGO_079 | 1/0/2033:2035, 1/0/2596:2597 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_2OGO_132 | 1/0/2037:2040, 1/0/2590:2594 | No text annotation | homologous IL_7A0S_074 IL_70335.1 | |
| IL_2OGO_080 | 1/0/2050:2052, 1/0/2421:2422 | Single bulged U | homologous IL_7A0S_075 IL_97561.6 | |
| IL_2OGO_081 | 1/0/2053:2054, 1/0/2417:2420 | Minor groove platform | homologous IL_7A0S_076 IL_34520.4 | |
| IL_2OGO_082 | 1/0/2064:2066, 1/0/2215:2218 | Isolated tHS basepair with bulges | homologous IL_4WF9_082 IL_87316.3 | |
| IL_2OGO_083 | 1/0/2068:2070, 1/0/2211:2213 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_71625.4 | |
| IL_2OGO_086 | 1/0/2082:2088, 1/0/2167:2173 | No text annotation | ||
| IL_2OGO_091 | 1/0/2276:2278, 1/0/2296:2300 | No text annotation | ||
| IL_2OGO_124 | 1/0/2276:2279, 1/0/2295:2300 | No text annotation | geometric IL_3NPQ_006 IL_65740.2 | |
| IL_2OGO_093 | 1/0/2329:2332, 1/0/2343:2346 | Double sheared | homologous IL_7A0S_081 IL_58355.3 | |
| IL_2OGO_094 | 1/0/2380:2382, 1/0/2393:2394 | No text annotation | ||
| IL_2OGO_133 | 1/0/2432:2434, 1/0/2475:2479 | No text annotation | ||
| IL_2OGO_095 | 1/0/2433:2434, 1/0/2475:2477 | Major groove platform | homologous IL_4WF9_090 IL_48076.9 | |
| IL_2OGO_096 | 1/0/2436:2438, 1/0/2472:2473 | No text annotation | ||
| IL_2OGO_125 | 1/0/2436:2440, 1/0/2468:2473 | No text annotation | ||
| IL_2OGO_097 | 1/0/2438:2440, 1/0/2468:2472 | No text annotation | ||
| IL_2OGO_098 | 1/0/2445:2449, 1/0/2459:2463 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_87767.3 | |
| IL_2OGO_099 | 1/0/2489:2491, 1/0/2553:2557 | Isolated non-canonical cWW with bulges | homologous IL_7A0S_089 IL_68118.5 | |
| IL_2OGO_100 | 1/0/2491:2492, 1/0/2550:2553 | Multiple bulged bases | geometric IL_7A0S_090 IL_44609.3 | |
| IL_2OGO_101 | 1/0/2501:2502, 1/0/2519:2522 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_94991.2 | |
| IL_2OGO_102 | 1/0/2570:2571, 1/0/2580:2582 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_2OGO_103 | 1/0/2615:2619, 1/0/2754:2762 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.4 | |
| IL_2OGO_105 | 1/0/2631:2637, 1/0/2642:2647 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.6 | |
| IL_2OGO_134 | 1/0/2659:2663, 1/0/2705:2707 | C-loop | homologous IL_7A0S_095 IL_63596.13 | |
| IL_2OGO_107 | 1/0/2666:2670, 1/0/2698:2702 | UAA/GAN related, with intercalation | homologous IL_7A0S_096 IL_82016.1 | |
| IL_2OGO_135 | 1/0/2674:2675, 1/0/2690:2694 | No text annotation | homologous IL_9DFE_105 IL_44609.3 | |
| IL_2OGO_109 | 1/0/2717:2722, 1/0/2742:2747 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_91079.1 | |
| IL_2OGO_110 | 1/0/2813:2814, 1/0/2853:2855 | Major groove intercalation | homologous IL_7A0S_099 IL_28408.3 | |
| IL_2OGO_111 | 1/0/2818:2820, 1/0/2846:2849 | Decoding loop related | homologous IL_7A0S_100 IL_05502.1 | |
| IL_2OGO_112 | 1/0/2822:2827, 1/0/2840:2844 | No text annotation | homologous IL_7A0S_101 IL_48489.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2OGO_010 | No text annotation | ||
| IL_2OGO_012 | Isolated non-canonical cWW pair | ||
| IL_2OGO_114 | Tandem non-canonical cWW pairs | ||
| IL_2OGO_022 | Isolated non-canonical cWW pair | ||
| IL_2OGO_025 | Single stack bend | ||
| IL_2OGO_028 | Isolated non-canonical cWW pair | ||
| IL_2OGO_115 | Isolated non-canonical cWW with bulges | ||
| IL_2OGO_032 | No text annotation | ||
| IL_2OGO_116 | No text annotation | ||
| IL_2OGO_038 | Isolated non-canonical cWW pair | ||
| IL_2OGO_041 | Isolated non-canonical cWW pair | ||
| IL_2OGO_042 | Isolated non-canonical cWW pair | ||
| IL_2OGO_045 | Isolated non-canonical cWW pair | ||
| IL_2OGO_046 | No text annotation | ||
| IL_2OGO_051 | C-loop with extra cWW pair | ||
| IL_2OGO_118 | No text annotation | ||
| IL_2OGO_053 | No text annotation | ||
| IL_2OGO_119 | No text annotation | ||
| IL_2OGO_060 | Isolated cWH basepair | ||
| IL_2OGO_121 | Isolated non-canonical cWW pair | ||
| IL_2OGO_068 | Isolated non-canonical cWW pair | ||
| IL_2OGO_071 | Isolated non-canonical cWW with bulges | ||
| IL_2OGO_123 | No text annotation | ||
| IL_2OGO_075 | Isolated non-canonical cWW pair | ||
| IL_2OGO_076 | Isolated non-canonical cWW pair | ||
| IL_2OGO_084 | Isolated cWH basepair | ||
| IL_2OGO_085 | Isolated non-canonical cWW pair | ||
| IL_2OGO_087 | No text annotation | ||
| IL_2OGO_088 | No text annotation | ||
| IL_2OGO_089 | Isolated non-canonical cWW pair | ||
| IL_2OGO_090 | No text annotation | ||
| IL_2OGO_092 | Isolated non-canonical cWW pair | ||
| IL_2OGO_126 | No text annotation | ||
| IL_2OGO_104 | Isolated cWH basepair | ||
| IL_2OGO_106 | C-loop with extra cWW pair | ||
| IL_2OGO_127 | No text annotation | ||
| IL_2OGO_108 | No text annotation | ||
| IL_2OGO_128 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_2OGO_012 | 1/0/24:31, 1/0/485:492, 1/0/519:526 | No text annotation | ||
| J3_2OGO_013 | 1/0/32:35, 1/0/457:472, 1/0/479:484 | No text annotation | homologous J3_7A0S_016 J3_07616.2 | |
| J3_2OGO_010 | 1/0/55:56, 1/0/69:75, 1/0/108:112 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_2OGO_019 | 1/0/611:639, 1/0/646:650, 1/0/659:669 | No text annotation | ||
| J3_2OGO_015 | 1/0/695:702, 1/0/786:790, 1/0/800:808 | No text annotation | ||
| J3_2OGO_001 | 1/0/696:702, 1/0/786:790, 1/0/800:807 | No text annotation | ||
| J3_2OGO_002 | 1/0/710:713, 1/0/745:750, 1/0/772:778 | No text annotation | ||
| J3_2OGO_016 | 1/0/710:713, 1/0/745:754, 1/0/769:778 | No text annotation | ||
| J3_2OGO_003 | 1/0/1066:1068, 1/0/1092:1102, 1/0/1111:1115 | No text annotation | ||
| J3_2OGO_004 | 1/0/1311:1316, 1/0/1641:1643, 1/0/1656:1659 | No text annotation | homologous J3_7A0S_006 J3_32852.7 | |
| J3_2OGO_005 | 1/0/1319:1322, 1/0/1621:1627, 1/0/1636:1638 | No text annotation | homologous J3_5J7L_042 NA | |
| J3_2OGO_020 | 1/0/1357:1363, 1/0/1394:1398, 1/0/1415:1416 | No text annotation | homologous J3_7A0S_018 J3_94309.2 | |
| J3_2OGO_021 | 1/0/1438:1443, 1/0/1580:1581, 1/0/1584:1590 | No text annotation | homologous J3_7A0S_019 J3_34864.3 | |
| J3_2OGO_007 | 1/0/2074:2076, 1/0/2179:2183, 1/0/2202:2207 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_2OGO_018 | 1/0/2261:2263, 1/0/2363:2374, 1/0/2400:2406 | No text annotation | homologous J3_7A0S_020 J3_04772.2 | |
| J3_2OGO_022 | 1/0/2274:2276, 1/0/2300:2302, 1/0/2311:2316 | No text annotation | homologous J3_7A0S_010 J3_05327.2 | |
| J3_2OGO_009 | 1/0/2496:2499, 1/0/2524:2526, 1/0/2540:2546 | No text annotation | homologous J3_7A0S_011 J3_32601.6 | |
| J3_2OGO_011 | 1/0/2789:2790, 1/0/2806:2811, 1/0/2857:2861 | No text annotation | homologous J3_7A0S_013 J3_76911.2 | |
| J4_2OGO_009 | 1/0/308:312, 1/0/327:330, 1/0/334:336, 1/0/348:352 | No text annotation | homologous J4_7A0S_002 J4_16174.1 | |
| J4_2OGO_002 | 1/0/1283:1289, 1/0/1307:1308, 1/0/1662:1665, 1/0/1992:1993 | No text annotation | homologous J4_7A0S_004 J4_64571.6 | |
| J4_2OGO_010 | 1/0/1323:1327, 1/0/1351:1356, 1/0/1417:1418, 1/0/1613:1620 | No text annotation | homologous J4_7A0S_005 J4_77353.2 | |
| J4_2OGO_011 | 1/0/1458:1460, 1/0/1481:1494, 1/0/1529:1545, 1/0/1558:1563 | No text annotation | ||
| J4_2OGO_005 | 1/0/1763:1767, 1/0/1779:1783, 1/0/1819:1822, 1/0/1958:1962 | No text annotation | homologous J4_7A0S_008 J4_61477.6 | |
| J4_2OGO_006 | 1/0/1825:1827, 1/0/1888:1889, 1/0/1907:1916, 1/0/1950:1955 | No text annotation | homologous J4_5J7L_026 NA | |
| J4_2OGO_007 | 1/0/2264:2268, 1/0/2322:2326, 1/0/2349:2351, 1/0/2360:2362 | No text annotation | homologous J4_4WF9_008 J4_98139.1 | |
| J4_2OGO_008 | 1/0/2622:2625, 1/0/2653:2655, 1/0/2711:2716, 1/0/2748:2751 | No text annotation | homologous J4_7A0S_010 J4_54165.1 | |
| J5_2OGO_007 | 1/0/46:53, 1/0/114:119, 1/0/128:129, 1/0/142:143, 1/0/154:155 | No text annotation | homologous J5_7A0S_001 J5_75459.1 | |
| J5_2OGO_008 | 1/0/593:598, 1/0/681:684, 1/0/822:825, 1/0/1209:1210, 1/0/1263:1269 | No text annotation | homologous J5_7A0S_004 J5_74302.6 | |
| J5_2OGO_003 | 1/0/1322:1327, 1/0/1351:1363, 1/0/1394:1398, 1/0/1415:1418, 1/0/1613:1621 | No text annotation | ||
| J5_2OGO_004 | 1/0/1691:1699, 1/0/1723:1724, 1/0/1742:1743, 1/0/1747:1755, 1/0/1971:1973 | No text annotation | homologous J5_7A0S_005 J5_99177.2 | |
| J5_2OGO_009 | 1/0/2040:2047, 1/0/2425:2432, 1/0/2479:2487, 1/0/2559:2567, 1/0/2585:2590 | No text annotation | ||
| J5_2OGO_006 | 1/0/2057:2060, 1/0/2222:2225, 1/0/2237:2238, 1/0/2260:2261, 1/0/2406:2414 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J6_2OGO_003 | 1/0/44:45, 1/0/156:160, 1/0/191:201, 1/0/208:212, 1/0/239:243, 1/0/439:446 | No text annotation | ||
| J6_2OGO_002 | 1/0/2057:2060, 1/0/2222:2225, 1/0/2237:2238, 1/0/2260:2263, 1/0/2363:2374, 1/0/2400:2414 | No text annotation | ||
| J7_2OGO_002 | 1/0/830:835, 1/0/848:850, 1/0/953:957, 1/0/982:987, 1/0/998:1002, 1/0/1174:1179, 1/0/1195:1204 | No text annotation | ||
| J11_2OGO_001 | 1/0/8:15, 1/0/535:543, 1/0/569:573, 1/0/586:588, 1/0/1274:1275, 1/0/2000:2006, 1/0/2023:2026, 1/0/2604:2609, 1/0/2768:2771, 1/0/2781:2786, 1/0/2864:2869 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_2OGO_014 | No text annotation | ||
| J3_2OGO_006 | No text annotation | ||
| J3_2OGO_017 | No text annotation | ||
| J3_2OGO_008 | No text annotation | ||
| J4_2OGO_001 | No text annotation | ||
| J4_2OGO_003 | No text annotation | ||
| J4_2OGO_004 | No text annotation | ||
| J5_2OGO_001 | No text annotation | ||
| J5_2OGO_002 | No text annotation | ||
| J5_2OGO_005 | No text annotation | ||
| J6_2OGO_001 | No text annotation | ||
| J7_2OGO_001 | No text annotation |
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