HL_2OGO_016

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CCUUAUGCG

Length

9 nucleotides

Bulged bases

2OGO|1|0|C|553, 2OGO|1|0|U|554, 2OGO|1|0|U|555, 2OGO|1|0|G|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OGO|1|0|C|552
2OGO|1|0|C|553
2OGO|1|0|U|554
2OGO|1|0|U|555
2OGO|1|0|A|556
2OGO|1|0|U|557
2OGO|1|0|G|558
2OGO|1|0|C|559
2OGO|1|0|G|560

Current chains

Chain 0

23S ribosomal RNA

Nearby chains