HL_2OGO_017

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

2OGO|1|0|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_017 not in the Motif Atlas

Homologous match to HL_7A0S_018

Geometric discrepancy: 0.1477

The information below is about HL_7A0S_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

2OGO|1|0|U|575
2OGO|1|0|A|576
2OGO|1|0|U|577
2OGO|1|0|U|578
2OGO|1|0|G|579
2OGO|1|0|A|580
2OGO|1|0|A|581
2OGO|1|0|G|582
2OGO|1|0|C|583
2OGO|1|0|A|584

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3