HL_2OGO_020

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CCGAAUAG

Length

8 nucleotides

Bulged bases

2OGO|1|0|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_020 not in the Motif Atlas

Homologous match to HL_7A0S_021

Geometric discrepancy: 0.4218

The information below is about HL_7A0S_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81314.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

2OGO|1|0|C|651
2OGO|1|0|C|652
2OGO|1|0|G|653
2OGO|1|0|A|654
2OGO|1|0|A|655
2OGO|1|0|U|656
2OGO|1|0|A|657
2OGO|1|0|G|658

Current chains

Chain 0

23S ribosomal RNA

Nearby chains