HL_2OGO_023

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

2OGO|1|0|A|794, 2OGO|1|0|A|797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_023 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.2072

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_91813.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

24

Unit IDs

2OGO|1|0|U|792
2OGO|1|0|G|793
2OGO|1|0|A|794
2OGO|1|0|A|795
2OGO|1|0|A|796
2OGO|1|0|A|797
2OGO|1|0|G|798

Current chains

Chain 0

23S ribosomal RNA

Nearby chains