HL_2OGO_026

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

AGCUAACU

Length

8 nucleotides

Bulged bases

2OGO|1|0|U|969, 2OGO|1|0|C|972

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_026 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.2352

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

2OGO|1|0|A|966
2OGO|1|0|G|967
2OGO|1|0|C|968
2OGO|1|0|U|969
2OGO|1|0|A|970
2OGO|1|0|A|971
2OGO|1|0|C|972
2OGO|1|0|U|973

Current chains

Chain 0

23S ribosomal RNA

Nearby chains