HL_2OGO_029

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_029 not in the Motif Atlas

Homologous match to HL_7RQB_030

Geometric discrepancy: 0.4891

The information below is about HL_7RQB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OGO|1|0|C|1103
2OGO|1|0|G|1104
2OGO|1|0|U|1105
2OGO|1|0|A|1106
2OGO|1|0|A|1107
2OGO|1|0|U|1108
2OGO|1|0|A|1109
2OGO|1|0|G|1110

Current chains

Chain 0

23S ribosomal RNA

Nearby chains