HL_2OGO_035

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GUCAAGAUUC

Length

10 nucleotides

Bulged bases

2OGO|1|0|U|1409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_035 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3501

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

2OGO|1|0|G|1402
2OGO|1|0|U|1403
2OGO|1|0|C|1404
2OGO|1|0|A|1405
2OGO|1|0|A|1406
2OGO|1|0|G|1407
2OGO|1|0|A|1408
2OGO|1|0|U|1409
2OGO|1|0|U|1410
2OGO|1|0|C|1411

Current chains

Chain 0

23S ribosomal RNA

Nearby chains