HL_2OGO_037

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GAAAAUC

Length

7 nucleotides

Bulged bases

2OGO|1|0|U|1513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_037 not in the Motif Atlas

Homologous match to HL_7A0S_037

Geometric discrepancy: 0.4022

The information below is about HL_7A0S_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39243.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

2OGO|1|0|G|1508
2OGO|1|0|A|1509
2OGO|1|0|A|1510
2OGO|1|0|A|1511
2OGO|1|0|A|1512
2OGO|1|0|U|1513
2OGO|1|0|C|1514

Current chains

Chain 0

23S ribosomal RNA

Nearby chains