HL_2OGO_039

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CAAG

Length

4 nucleotides

Bulged bases

2OGO|1|0|A|1582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_039 not in the Motif Atlas

Homologous match to HL_4WF9_037

Geometric discrepancy: 0.2885

The information below is about HL_4WF9_037

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.4

Basepair signature

cWW-F

Number of instances in this motif group

48

Unit IDs

2OGO|1|0|C|1581
2OGO|1|0|A|1582
2OGO|1|0|A|1583
2OGO|1|0|G|1584

Current chains

Chain 0

23S ribosomal RNA

Nearby chains