HL_2OGO_042

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

2OGO|1|0|U|1710, 2OGO|1|0|C|1711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_042 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3368

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

2OGO|1|0|C|1708
2OGO|1|0|U|1709
2OGO|1|0|U|1710
2OGO|1|0|C|1711
2OGO|1|0|G|1712
2OGO|1|0|G|1713

Current chains

Chain 0

23S ribosomal RNA

Nearby chains