HL_2OGO_046

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

2OGO|1|0|A|1799, 2OGO|1|0|C|1801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_046 not in the Motif Atlas

Homologous match to HL_4WF9_044

Geometric discrepancy: 0.2107

The information below is about HL_4WF9_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OGO|1|0|C|1797
2OGO|1|0|G|1798
2OGO|1|0|A|1799
2OGO|1|0|A|1800
2OGO|1|0|C|1801
2OGO|1|0|A|1802
2OGO|1|0|G|1803

Current chains

Chain 0

23S ribosomal RNA

Nearby chains