HL_2OGO_052

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

2OGO|1|0|G|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_052 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1282

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

2OGO|1|0|C|2227
2OGO|1|0|U|2228
2OGO|1|0|G|2229
2OGO|1|0|G|2230
2OGO|1|0|G|2231
2OGO|1|0|G|2232
2OGO|1|0|C|2233
2OGO|1|0|G|2234
2OGO|1|0|G|2235

Current chains

Chain 0

23S ribosomal RNA

Nearby chains