HL_2OGO_064

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GUACCAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_064 not in the Motif Atlas

Geometric match to HL_3R4F_002

Geometric discrepancy: 0.3794

The information below is about HL_3R4F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38592.1

Basepair signature

cWW-cWW-F-F

Number of instances in this motif group

2

Unit IDs

2OGO|1|0|G|2679
2OGO|1|0|U|2680
2OGO|1|0|A|2681
2OGO|1|0|C|2682
2OGO|1|0|C|2683
2OGO|1|0|A|2684
2OGO|1|0|A|2685
2OGO|1|0|C|2686

Current chains

Chain 0

23S ribosomal RNA

Nearby chains