HL_2OGO_065

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

2OGO|1|0|G|2731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_065 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.4008

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.3

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

2OGO|1|0|C|2725
2OGO|1|0|U|2726
2OGO|1|0|G|2727
2OGO|1|0|A|2728
2OGO|1|0|A|2729
2OGO|1|0|A|2730
2OGO|1|0|G|2731
2OGO|1|0|C|2732
2OGO|1|0|A|2733
2OGO|1|0|U|2734
2OGO|1|0|C|2735
2OGO|1|0|U|2736
2OGO|1|0|A|2737
2OGO|1|0|A|2738
2OGO|1|0|G|2739

Current chains

Chain 0

23S ribosomal RNA

Nearby chains