HL_2OGO_066

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UGUUCA

Length

6 nucleotides

Bulged bases

2OGO|1|0|U|2774

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_066 not in the Motif Atlas

Homologous match to HL_7A0S_066

Geometric discrepancy: 0.434

The information below is about HL_7A0S_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OGO|1|0|U|2772
2OGO|1|0|G|2773
2OGO|1|0|U|2774
2OGO|1|0|U|2778
2OGO|1|0|C|2779
2OGO|1|0|A|2780

Current chains

Chain 0

23S ribosomal RNA

Nearby chains