HL_2OGO_067

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

2OGO|1|0|A|2795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_067 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.1156

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.2

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

2OGO|1|0|G|2794
2OGO|1|0|A|2795
2OGO|1|0|A|2796
2OGO|1|0|G|2797
2OGO|1|0|A|2798
2OGO|1|0|C|2799
2OGO|1|0|C|2800
2OGO|1|0|A|2801
2OGO|1|0|C|2802

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3