HL_2OGO_069

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GGUGAGAGUCC

Length

11 nucleotides

Bulged bases

2OGO|1|0|G|340, 2OGO|1|0|A|341, 2OGO|1|0|G|342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_069 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2636

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

2OGO|1|0|G|337
2OGO|1|0|G|338
2OGO|1|0|U|339
2OGO|1|0|G|340
2OGO|1|0|A|341
2OGO|1|0|G|342
2OGO|1|0|A|343
2OGO|1|0|G|344
2OGO|1|0|U|345
2OGO|1|0|C|346
2OGO|1|0|C|347

Current chains

Chain 0

23S ribosomal RNA

Nearby chains