HL_2OGO_071

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

AAGCUAUGGCUAUGCU

Length

16 nucleotides

Bulged bases

2OGO|1|0|A|1468, 2OGO|1|0|U|1469, 2OGO|1|0|U|1475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OGO|1|0|A|1463
2OGO|1|0|A|1464
2OGO|1|0|G|1465
2OGO|1|0|C|1466
2OGO|1|0|U|1467
2OGO|1|0|A|1468
2OGO|1|0|U|1469
2OGO|1|0|G|1470
2OGO|1|0|G|1471
2OGO|1|0|C|1472
2OGO|1|0|U|1473
2OGO|1|0|A|1474
2OGO|1|0|U|1475
2OGO|1|0|G|1476
2OGO|1|0|C|1477
2OGO|1|0|U|1478

Current chains

Chain 0

23S ribosomal RNA

Nearby chains