HL_2OGO_074

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGAUUACCUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_074 not in the Motif Atlas

Homologous match to HL_4WF9_067

Geometric discrepancy: 0.35

The information below is about HL_4WF9_067

Detailed Annotation

Pseudoknot with intercalation

Broad Annotation

No text annotation

Motif group

HL_17803.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

2OGO|1|0|C|58
2OGO|1|0|G|59
2OGO|1|0|A|60
2OGO|1|0|U|61
2OGO|1|0|U|62
2OGO|1|0|A|63
2OGO|1|0|C|64
2OGO|1|0|C|65
2OGO|1|0|U|66
2OGO|1|0|G|67

Current chains

Chain 0

23S ribosomal RNA

Nearby chains