HL_2OIH_001

3D structure

PDB id

2OIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hepatitis Delta Virus gemonic ribozyme precursor with C75U mutation and bound to monovalent cation Tl+

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUCCUCGCUG

Length

10 nucleotides

Bulged bases

2OIH|1|B|U|123, 2OIH|1|B|C|126, 2OIH|1|B|U|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OIH_001 not in the Motif Atlas

Geometric match to HL_4PRF_001

Geometric discrepancy: 0.2439

The information below is about HL_4PRF_001

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_37671.1

Basepair signature

cWW-tWW-F-F-F

Number of instances in this motif group

3

Unit IDs

2OIH|1|B|C|119
2OIH|1|B|U|120
2OIH|1|B|C|121
2OIH|1|B|C|122
2OIH|1|B|U|123
2OIH|1|B|C|124
2OIH|1|B|G|125
2OIH|1|B|C|126
2OIH|1|B|U|127
2OIH|1|B|G|128

Current chains

Chain B

HDV ribozyme

Nearby chains