HL_2OIH_002

3D structure

PDB id

2OIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hepatitis Delta Virus gemonic ribozyme precursor with C75U mutation and bound to monovalent cation Tl+

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OIH_002 not in the Motif Atlas

Geometric match to HL_4PR6_002

Geometric discrepancy: 0.09

The information below is about HL_4PR6_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_99373.1

Basepair signature

cWW-F-F-F-cSH-F-F-F-F

Number of instances in this motif group

3

Unit IDs

2OIH|1|B|C|147
2OIH|1|B|A|148
2OIH|1|B|U|149
2OIH|1|B|U|150
2OIH|1|B|G|151
2OIH|1|B|C|152
2OIH|1|B|A|153
2OIH|1|B|C|154
2OIH|1|B|U|155
2OIH|1|B|C|156
2OIH|1|B|C|157
2OIH|1|B|G|158

Current chains

Chain B

HDV ribozyme

Nearby chains

Chain A

U1 small nuclear ribonucleoprotein A