HL_2OJ3_001

3D structure

PDB id

2OJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hepatitis Delta Virus ribozyme precursor structure, with C75U mutation, bound to Tl+ and cobalt hexammine (Co(NH3)63+)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUCCUCGCUG

Length

10 nucleotides

Bulged bases

2OJ3|1|B|U|123, 2OJ3|1|B|C|126, 2OJ3|1|B|U|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OJ3_001 not in the Motif Atlas

Geometric match to HL_4PRF_001

Geometric discrepancy: 0.2499

The information below is about HL_4PRF_001

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_37671.1

Basepair signature

cWW-tWW-F-F-F

Number of instances in this motif group

3

Unit IDs

2OJ3|1|B|C|119
2OJ3|1|B|U|120
2OJ3|1|B|C|121
2OJ3|1|B|C|122
2OJ3|1|B|U|123
2OJ3|1|B|C|124
2OJ3|1|B|G|125
2OJ3|1|B|C|126
2OJ3|1|B|U|127
2OJ3|1|B|G|128

Current chains

Chain B

HDV RIBOZYME

Nearby chains