HL_2OJ3_002

3D structure

PDB id

2OJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hepatitis Delta Virus ribozyme precursor structure, with C75U mutation, bound to Tl+ and cobalt hexammine (Co(NH3)63+)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OJ3_002 not in the Motif Atlas

Geometric match to HL_4PR6_002

Geometric discrepancy: 0.1

The information below is about HL_4PR6_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_99373.1

Basepair signature

cWW-F-F-F-cSH-F-F-F-F

Number of instances in this motif group

3

Unit IDs

2OJ3|1|B|C|147
2OJ3|1|B|A|148
2OJ3|1|B|U|149
2OJ3|1|B|U|150
2OJ3|1|B|G|151
2OJ3|1|B|C|152
2OJ3|1|B|A|153
2OJ3|1|B|C|154
2OJ3|1|B|U|155
2OJ3|1|B|C|156
2OJ3|1|B|C|157
2OJ3|1|B|G|158

Current chains

Chain B

HDV RIBOZYME

Nearby chains

Chain A

U1 small nuclear ribonucleoprotein A