HL_2OOM_021

3D structure

PDB id

2OOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR structure of a kissing complex formed between the TAR RNA element of HIV-1 and a LNA/RNA aptamer

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CCUGGGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OOM_021 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3216

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

2OOM|11|A|C|5
2OOM|11|A|C|6
2OOM|11|A|U|7
2OOM|11|A|G|8
2OOM|11|A|G|9
2OOM|11|A|G|10
2OOM|11|A|A|11
2OOM|11|A|G|12

Current chains

Chain A

RNA 16-mer

Nearby chains

Chain B

TAR RNA element of HIV-1